PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026687-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 343aa    MW: 38157.1 Da    PI: 4.6191
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026687-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-094252345
                      -HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                      +W++Ia++++ gRt++++k++w+
  PSME_00026687-RA  4 SWSKIAAHLP-GRTDNEIKNYWN 25
                      5*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.415132IPR017930Myb domain
SuperFamilySSF466893.67E-7333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-11428IPR009057Homeodomain-like
PfamPF002497.3E-7426IPR001005SANT/Myb domain
CDDcd001672.25E-6525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MISSWSKIAA HLPGRTDNEI KNYWNSSIKK KFRLKHDRPS STIAAANSKS YIPFQSNHIC  60
IEFDNICNAN SARAHVLDIV TSSQRNLEVM LEGYHPAINA FNAVTTGDNQ LFVPVVQTHD  120
QNEEPLIYRE PTNNQLISYS QLWNNANSSH LQSQQNYKAA KPSACDELVI ESYRTTVPPH  180
EDPAFANNYS MGSTEISIPA LVETLKDEIG KMEQINQNEI MNDYSLFTAS SGESSWGADH  240
SYSNIPAAFT DTYPGVSYTT HGHELLGIRI LEDHVSYQLP YIEVGGEEFG DQLGSSIIVN  300
EQENSKPITA IFGGGTGQAT VWDDMYNINT TAAPDFFNQI SFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-11myb domain protein 20